hemistry and biochemistry

Nanthakumar, NN; Klopcic, CE; Fernandez, I; Walker, WA. Normal and glucocorticoid-induced development of the human small intestinal xenograft. Am J Physiol Regul Integr Comp Physiol. 285, 1, pp. R162-70 (2003)

Klopcic, CE; Psendorfer, P; Fernandez, I; Chen, J; Walker, WA; Nanthakumar, NN. Characterization of the developing human jejunal and ileal xenograft in vivo using disaccharidases as markers. Gastroenterology 118, 4, p. A290 (2000)

Williams, AL and Johnson, JN. The bronsted acid-catalyzed direct aza-darzens synthesis of N-alkyl cis-azirdines. Journal of the American Chemical Society 126, 6, pp. 1612-1613 (2004)

Nugent, BM; Williams, AL; Prabhakaran, EN; Johnston, JN. Free radical-mediated vinyl amination: A mild, general pyrrolidinyl enamine synthesis. Tetrahedron 59, 45, pp. 8877-8888 (2003)

Prabhakaran, EN; Nugent, BM; Williams, AL; Nailor, KE; Johnston, JN. Free-radical-mediated vinyl amination: Access to N,N-dialkyl enamines and their beta-stannyl and beta-thio derivatives. Organic Letters 4, 24, pp. 4197-4200 (2002)

Vaish, NK; Larralde, R; Fraley, AW; Szostak, JW; McLaughlin, LW. A novel, modification-dependent ATP-binding aptamer selected from an RNA library incorporating a cationic functionality. Biochemistry 42, 29, pp. 8842-8851 (2003)

Fraley, AW; Chen, DL; Johnson, K; McLaughlin, LW. An HIV reverse transcriptase-selective nucleoside chain terminator. Journal of the American Chemical Society 125, 3, pp. 616-617 (2003)

Vaish, NK; Fraley, AW; Szostak, JW; McLaughlin, LW. Expanding the structural and functional diversity of RNA; analog uridine triphosphates as candidates for in vitro selection of nucleic acids. Nuc. Acids Res. 28, 17, pp. 3316-3322 (2000)

Guz, NR and Phillips, AJ. Practical and highly selective oxazolidinethione-based asymmetric acetate aldol reactions with aliphatic aldehydes. Organic Letters 4, 13, pp. 2253-2256 (2002)

Guz, NR; Lorenz, P; Metraux, JP. Oregonin from the bark of European Alnus species. Biochemical Systematics and Ecology 30, 5, pp. 471-474 (2002)

Guz, NR; Lorenz, P; Stermitz, FR. New coumarins from Harbouria trachypleura: isolution and synthesis. Tetrahedron Letters 42, 37, pp. 6491-6494 (2001)

Guz, NR; Stermitz, FR; Johnson, JB; Beeson, TD; Willen, S; Hsiang, JF; Lewis, K. Flavonolignan and flavone inhibitors of a Staphylococcus aureus multidrug resistance pump: Structure-activity relationships. J. Medicinal Chem. 44, 2, pp 261-268 (2001)

Guz, NR and Stermitz, FR. Spectral comparisons of coniferyl and cinnamyl alcohol epoxide derivatives with a purported cis-epoxyconiferyl alcohol isolate. Phytochemistry 54, 8, pp. 897-899 (2000)

Guz, NR and Stermitz, FR. Synthesis and structures of regioisomeric hydnocarpin-type flavonolignans. J. Natural Prod. 63, 8, pp. 1140-1145 (2000)

Dodge, JA; Nissen, JS; Presnell, M. A general procedure for mitsunobu inversion of sterically hindered alcohols: Inversion of menthol. Organic Syntheses 73, pp 110-115 (1996)

Dodge, JA; Trujillo, JI; Presnell, M. Effect of the acidic component on the mitsunobu inversion of a sterically hindered alcohol. Journal of Organic Chemistry 59, 1, pp. 234-236 (1994)

Mukhopadhyay, S; Kim, BS; Chipman, PR; Rossmann, MG; Kuhn, RJ. Structure of West Nile virus. Science 302, 5643, p 248 (2003)

Rossmann, MG; Mukhopadhyay, S; Zhang, Y; Corver, J; Chipman, PR; Zhang, W; Sedlak, D; Baker, TS; Strauss, JH; Kuhn, RJ. The structures of mature and immature dengue virus particles. Biophysical Journal 81, 1, Part 2 Suppl. S, p. 523A (2004)

Zhang, W; Chipman, PR; Corver, J; Johnson, PR; Zhang, Y; Mukhopadhyay, S; Baker, TS; Strauss, JH; Rossmann, MG; Kuhn, RJ. Visualization of membrane protein domains by cryo-electron microscopy of dengue virus. Nature Structural Biology 10, 11, pp. 907-912 (2003)

Mukhopadhyay, S; Tang, CH; Huang, J; Palakal, M. Genetic sequence classification and its application to cross-species homology detection. Journal of VLSI Signal Processing Systems for Signal Image and Video Technology 35, 3, pp. 273-285 (2003)

He, YN; Mueller, S; Chipman, PR; Bator, CM; Peng, XZ; Bowman, VD; Mukhopadhyay, S; Wimmer, E; Kuhn, RJ; Rossmann, MG. Complexes of poliovirus serotypes with their common cellular receptor, CD155. Journal of Virology 77, 8, pp. 4827-4835 (2003)

Zhang, W; Mukhopadhyay, S; Pletnev, SV; Baker, TS; Kuhn, RJ; Rossmann, MG. Placement of the structural proteins in Sindbis virus. Journal of Virology 76, 22, pp. 11645-11658 (2002)

Mukhopadhyay, S; Chipman, PR; Hong, EM; Kuhn, RJ; Rossmann, MG. In vitro-assembled alphavirus core-like particles maintain a structure similar to that of nucleocapsid cores in mature virus. Journal of Virology 76, 21, pp. 11128-11132 (2002)

Kuhn, RJ; Zhang, W; Rossmann, MG; Pletnev, SV; Corver, J; Lenches, E; Jones, CT; Mukhopadhyay, S; Chipman, PR; Strauss, EG; Baker, TS; Strauss, JH. Structure of dengue virus: Implications for flavivirus organization, maturation, and fusion. Cell 108, 5, pp. 717-725 (2002)

Mukhopadhyay, S; and Ross, EM. Quench-flow kinetic measurement of individual reactions of G-protein-catalyzed GTPase cycle. G Protein Pathways Part B: G Proteins and Their Regulators SE Methods in Enzymology 344, pp. 350-369 (2002)

Pletnev, SV; Zhang, W; Mukhopadhyay, S; Fisher, BR; Hernandez, R; Brown, DT; Baker, TS; Rossmann, MG; Kuhn, RJ. Locations of carbohydrate sites on alphavirus glycoproteins show that E1 forms an icosahedral scaffold. Cell 105, 1, pp. 127-136 (2000)

Osborne, SE; Matsumura, I; Ellington, AD. Aptamers as therapeutic and diagnostic reagents: problems and prospects. Current Opinion in Chemical Biology 1, 1, pp. 5-9 (1997)

Osborne, SE and Ellington, AD. Nucleic acid selection and the challenge of combinatorial chemistry. Chemical Reviews 97, 2, pp 349-370 (1997)

Osborne, SE; Cain, RJ; Glick, GD. Structure and dynamics of disulfide cross-linked DNA triple helices. Journal of the American Chemical Society 119, 6, pp. 1171-1182 (1997)

Volker, J; Osborne, SE; Glick, GD; Breslauer, KJ. Thermodynamic properties of a conformationally constrained intramolecular DNA triple helix. Biochemisitry 36, 4, pp. 756-767 (1997)

Osborne, SE; Volker, J; Stevens, SY; Breslauer, KJ; Glick, GD. Design, synthesis, and analysis of disulfide cross-linked DNA duplexes. Journal of the American Chemical Society 118, 48, pp. 11993-12003 (1996)

Osborne, SE and Ellington, AD. Incorporating disulfide cross-links at the terminus of oligonucleotides via solid-phase nucleic acid synthesis. Bioorganic & Medicinal Chemistry Letters 6, 19, pp. 2339-2342 (1996)

Goodwin, JT; Osborne, SE; Scholle, EJ; Glick, GD. Design, synthesis, and analysis of yeast tRNA(Phe) analogs possessing intra- and interhelical dusulfide cross-links. Journal of the American Chemical Society 118, pp. 5207-5215 (1996)

Goodwin, JT; Osborne, SE; Swanson, PC; Glick, GD. Synthesis of a disulfide cross-linked DNA triple-helix. Tetrahedron Letters 35, 26, pp. 4527-4530 (1994)

Wang, H; Osborne, SE; Zuiderweg, ERP; Glick, GD. 3-Dimensional structure of a disulfide-stabilized non-ground-state DNA hairpin. Journal of the American Chemical Society 116, 11, pp. 5021-5022 (1994)

Knibbs, RN; Osborne, SE; Glick, GD; Goldstein, IJ. Binding determinants of the sialic acid-specific lectin from the slub limax-flavus. Journal of Biological Chemistry 268, 25, pp. 18524-18531 (1993)

Blatt, NB; Osborne, SE; Cain, RJ; Glick, GD. Conformational studies of hairpin sequences from the cole1 cruciform. Biochimie 75, 6, pp. 433-441 (1993)

Loganathan, D; Osborne, SE; Glick, GD; Goldstein, IJ. Synthesis of high-affinity, hydrophobic monosaccharide derivatives and study of their interaction with concanavalin-A, the pea, the lintil, and fava-bean lectins. Archives of Biochemistry and Biophysics 299, 2, pp. 268-274 (1992)

Glick, GD; Osborne, SE; Knitt, DS; Marino, JP. Trapping and isolation of an alternative DNA conformation. Journal of the American Chemical Society 114, 13, pp. 5447-5448 (1992)

Dieckmann, MS and Gray, KA. A comparison of the degradation of 4-nitrophenol via direct and sensitized photocatalysis in TiO2 slurries. Water Research 30, 5, pp. 1169-1183 (1996)

Dieckmann, MS; Gray, KA; Zepp, RG. The sensitized photocatalysis of azo dyes in a solid system - a feasibility study. Chemosphere 28, 5, pp. 1021-1034 (1994)

Dieckmann, MS; Gray, KA; Kamat, PV. Photocatalyzed degradation of adsorbed nitrophenolic compounds on semiconductor surfaces. Water Science Tech. (1992) 25, 3, pp. 277-279 (1992)

J. Am. Chem. Soc. (1997) 119, pp 6195-6196

Inorg. Chem. (1995) 34, pp 2497-2498

Ortiz-Acevedo, A; Dieckmann, GR. Synthesis of reversible cyclic peptides. Tetrahedron Letters 45, 36, pp. 6795-6798 (2004)

Zorbas, V; Ortiz-Acevedo, A; Dalton, AB; Yoshida, MM; Dieckmann, GR; Draper, RK; Baughman, RH; Jose-Yacaman, M; Musselman, IH. Preparation and characterization of individual peptide-wrapped single-walled carbon nanotubes. Journal of the American Chemical Society 126, 23, pp. 7222-7227 (2004)

De Leon-Rodriguez, LM; Kovacs, Z; Dieckmann, GR; Sherry, AD. Solid-phase synthesis of DOTA-peptides. Chemistry - A European Journal 10, 5, pp. 1149-1155 (2004)

Dieckmann, GR; Ortiz-Acevedo, A; Dalton, AB; Razal, J; Chen, J; Munox, E; Musselman, IH; Baughman, RH; Draper, RK. Dieckmann, GR; Ortiz-Acevedo, A; Dalton, AB; Razal, J; Chen, J; Munox, E; Musselman, IH; Baughman, RH; Draper, RK. Controlled assembly of carbon nanotubes in aqueous solution with designed peptides. Biopolymers 71, 3, p. 300 (2003)

Dieckmann, GR; Ortiz-Acevedo, A; Dalton, AB; Razal, J; Chen, J; Munoz, E; Musselman, IH; Baughman, RH; Draper, RK. Dieckmann, GR; Ortiz-Acevedo, A; Dalton, AB; Razal, J; Chen, J; Munox, E; Musselman, IH; Baughman, RH; Draper, RK. Controlled assembly of carbon nanotubes in aqueous solution with designed peptides. Biopolymers 71, 3, p. 403 (2003)

Dieckmann, GR; Dalton, AB; Johnson, PA; Razal, J; Chen, J; Giordano, GM; Munoz, E; Musselman, IH; Baughman, RH; Draper, RK. Controlled assembly of carbon nanotubes by designed amphiphilic peptide helices. Journal of the American Chemical Society 125, 7, pp. 1770-1777 (2003)

Coutinho, D; Acevedo, AO; Dieckmann, GR; Balkus, KJ. Molecular imprinting of mesoporous SBA-15 with chiral ruthenium complexes. Microporous and Mesoporous Materials 54, 3, pp. 249-255 (2002)

Dieckmann, GR; Lear, JD; Zhong, QF; Klein, ML; DeGrado, WF; Sharp, KA. Exploration of the structural features defining ion channel conduction. Biophysical Journal 76, 1, Part 2, p. A200 (1999)

Dieckmann, GR; Lear, JD; Zhong, QF; Klein, ML; DeGrado, WF; Sharp, KA. Exploration of the structural features defining the conduction properties of a synthetic ion channel. Biophysical Journal 76, 2, pp. 618-630 (1999)

Forrest, LR; DeGrado, WF; Dieckmann, GR; Sansom, MSP. Two modes of the influenza A M2 channel domain: verification by comparison. Folding & Design 3, 6, pp. 443-448 (1998)

Dieckmann, GR; McRorie, DK; Lear, JD; Sharp, KA; DeGrado, WF; Pecoraro, VL. The role of protonation and metal chelation preferences in defining the properties of mercury-binding coiled coils. Journal of Molecular Biology 280, 5, pp. 897-912 (1998)

DeGrado, WF; Lear, JD; Dieckmann, GR; Schneider, J; Pinto, LH; Gandhi, CS; Lamb, RA. Analysis and design of ion channel proteins. Faseb Journal 11, 9, Suppl. S, p. A832 (1997)

Pinto, LH; Dieckmann, GR; Gandhi, CS; Papworth, CG; Braman, J; Shaughnessy, MA; Lear, JD; Lamb, RA; DeGrado, WF. A functionally defined model for the M-2 proton channel of influenza A virus suggests a mechanism for its ion selectivity. Proceedings of the National Academy of Sciences of the United States of America 94, 21, pp. 11301-11306 (1997)

Dieckmann, GR and DeGrado, WF. Modeling transmembrane helical oligomers. Current Opinion in Structural Biology 7, 4, pp. 486-494 (1997)

K-Pax

On a Beam of Light
Harold A. Wittcoff '40 Harold A. Wittcoff and Mark M. Green. Organic Chemistry Principles and Industrial Practice (Wiley-VCH - ISBN: 3-527-30289-1)